PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WRKY

Protein Properties

Length: 204aa MW: 21669.6 Da PI: 6.5161

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G108500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh Seita.3G108500.1.p 108 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 166 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.3E-33	96	168	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-28	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	31.996	103	168	IPR003657	WRKY domain
SMART	SM00774	1.2E-35	108	167	IPR003657	WRKY domain
Pfam	PF03106	1.7E-24	109	165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAASLGLNPE ALFSSFSSSY YSPFMSDYAP SFPAASNAVD DAAAFSAELD DLCRFEYSPA 60 APVFASAGGG AGGDDRNDKS MSCEGGDEKR PRSNGRIGFR TRSEVEILDD GFKWRKYGKK 120 AVKNSPNPRN YYRCSSEGCG VKKRVERDRD DPRYVITTYD GVHNHASPTA AAAIQYGSGG 180 GGFYSPPSSG SPSAASYSGS YLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	93	168	2	77	Probable WRKY transcription factor 4
2lex_A	4e-28	93	168	2	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G108500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058609	1e-143	KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960874.1	1e-145	probable WRKY transcription factor 51
Swissprot	Q8VWQ5	4e-41	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	K3Z9Q8	1e-144	K3Z9Q8_SETIT; Uncharacterized protein
STRING	Si023279m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-41	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Seita.3G108500.1.p
Entrez Gene	101778621

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]