PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G104500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 302aa    MW: 32509.4 Da    PI: 9.9244
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G104500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.62e-131162451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgk 88 
                         lppG+ F P+d+ +v  yL + + g  l+++  i + d +++  ++L  + ++++ke +fF++ +++  +g++++   +  g W+  +t  
  Seita.3G104500.1.p 116 LPPGILFAPKDK-VV--YLLPCLLGWLLPADGLILDDDPLSASSQELL-ERNGHKKEAFFFVEGQSRCGKGTQQKGtCAGGGWWEgqKTCA 202
                         79*********8.55..9************999**************6.4567789***************99999455567776333322 PP

                 NAM  89 dkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         + + l+   ++e+ + kk L f+ g  + k e++ Wvm ey++
  Seita.3G104500.1.p 203 KGDKLHVpdGSEAAWRKKALKFHCGsGSGKKESAGWVMYEYAV 245
                         2222222458899**********66334455789*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-20110264IPR003441NAC domain
PROSITE profilePS5100516.734116265IPR003441NAC domain
PfamPF023652.2E-7117244IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGPFCPWLD DQQKIESKDP DVIHPPAASR RLPQAPPSSP LSDRRRGPSL PLPAAILQRP  60
KGYPPGTRVW APSAGARPAP SATRAPACVN PKQAIVSPIA QEQERAKRGA MAAIGLPPGI  120
LFAPKDKVVY LLPCLLGWLL PADGLILDDD PLSASSQELL ERNGHKKEAF FFVEGQSRCG  180
KGTQQKGTCA GGGWWEGQKT CAKGDKLHVP DGSEAAWRKK ALKFHCGSGS GKKESAGWVM  240
YEYAVNPPPG DLARSPLRLC HIRLSSYGRK QSCGSLARRP FSCVHRFGGI FIQVNRADAE  300
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G104500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438091.14e-70uncharacterized protein LOC8065510
TrEMBLA0A368QDL40.0A0A368QDL4_SETIT; Uncharacterized protein
STRINGSi025175m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137