 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.3G080700.1.p |
| Common Name | LOC101766478, SETIT_025069mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 220aa MW: 23032.3 Da PI: 6.2482 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G080700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00025 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C++ F++ L H++ H
Seita.3G080700.1.p 53 YECVFCKRGFTTAQALGGHMNIH 75
99*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MDSGSNMESK AASGDEAAAM TTSPGPESEA VAGEEEAAVS PPPAAAASPR PYYECVFCKR 60
GFTTAQALGG HMNIHRRDRA KPARDSPAGI TSVSRNVECY NKYRHLASSS SYPLPAQSSS 120
PIPVGAGSSF GMYYVSSGVA AAAAAARLDA EDGSPSSVSP RELTLFGEAK RDQDLHLGLG 180
RQEHGSRTTE GGGSERQQSG EPPERELDLE LRLGRRPRH*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC145477 | 1e-41 | AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence. |
| GenBank | AP014961 | 1e-41 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
