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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.3G045800.1.p |
Common Name | LOC101770505, SETIT_024430mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
LBD |
Protein Properties |
Length: 211aa MW: 21796.7 Da PI: 6.698 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.3G045800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 136.8 | 7.6e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ lk
Seita.3G045800.1.p 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQDLPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQRQVNDLK 126
7****************************************************************************************** PP
DUF260 92 aelallkee 100
a+la++++e
Seita.3G045800.1.p 127 AQLARAHAE 135
*****9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MDSSSSDTTA TAALPHGGGA STAPTSPPAA AVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFATAHR VFGASNIIKL LQDLPEEHRA DAVSSMVYEA SARIRDPVYG CAGAICQLQR 120 QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAAASPA YCGAVDYTSS QLAAAATPAA 180 HADALYVVDG GSGLQLQASP VSWADEPLWT *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC079021 | 7e-77 | AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence. |
GenBank | AC093089 | 7e-77 | AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence. |
GenBank | AP014961 | 7e-77 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | CP012613 | 7e-77 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |