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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.3G029300.1.p |
| Common Name | LOC101785208, SETIT_022785mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 303aa MW: 31352.4 Da PI: 9.7909 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.3G029300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.9 | 6.4e-07 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+G++C+FaHg+
Seita.3G029300.1.p 105 KTRMCTKYNTVEGCKFGEKCHFAHGE 130
8999999999999***********96 PP
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| 2 | zf-CCCH | 38.1 | 2.6e-12 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC +f + GtC +GdrC+FaHg+
Seita.3G029300.1.p 269 YKTKLCENFVK-GTCTFGDRCHFAHGE 294
9**********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.324 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.1 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.5 | 45 | 62 | No hit | No description |
| SMART | SM00356 | 0.39 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.45 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.16E-8 | 104 | 133 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-12 | 105 | 134 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.042 | 109 | 129 | No hit | No description |
| SuperFamily | SSF54791 | 1.08E-13 | 167 | 242 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 3.2E-14 | 171 | 241 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.6E-9 | 171 | 241 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 13.754 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 7.8E-10 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 7.26E-13 | 174 | 236 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 3.3E-15 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-9 | 267 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-8 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.488 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.4E-10 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MEGAAAARKR SRPETANGVA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF 60
LHFVPGGYPA VAKMLNLGSP AVSAPARASV DHAAVANSHP ASTGKTRMCT KYNTVEGCKF 120
GEKCHFAHGE RELGRPAYMS HEGPPMGGRY GGRPEPPPPV AMGPPAGNFG ASATAKISVD 180
ASLAGGIIGK GGVNTKQICR VAGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240
ASISASMPPK APPAPAGGRG GAPGGRSNYK TKLCENFVKG TCTFGDRCHF AHGENEQRRG 300
AA*
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