PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.3G027500.1.p | ||||||||
Common Name | SETIT_024685mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 451aa MW: 49227.4 Da PI: 6.8846 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.2e-06 | 402 | 425 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Seita.3G027500.1.p 402 TKPCAYFNSARGCRNGANCTFLHD 425 899********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.657 | 399 | 427 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-5 | 401 | 428 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 402 | 425 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-6 | 402 | 427 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MMGSRRPRRV SWATGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL 60 PPGFESLQPT NDHKIDISQI PLIRWRCPPQ ILYNPDWLVV AGEESVEAAL QNERIFGALE 120 AIYPRSSNIP PNPFVSPDVK DSYFDDSRTQ LVPLIPVEED DVSDQLEEPP AGPPNSYHQS 180 DKYDSAIVRV PQGSDAPFTT AQQHPNGSIN TASAAGISTD PDAVAAAIMQ SNQMGNMIDQ 240 DLLIKILSDP AQLERLMKEY GTLKHEQPTN SPVPAPMLRG PPPQMTASIP VPFPDHVTTF 300 HNINPTLPPP PPVMNRLPPA IPSVGMNPPA SSSQAVNFSN IPGRGINYYK TLIHQHGGER 360 QEPLQQHGMQ FAMHHHSVPS QTSTIDVVSN GSMPGREKQR PTKPCAYFNS ARGCRNGANC 420 TFLHDVSAAR KEQPKGSKRI KLDSRIAGRY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.3G027500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960188.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | Q7XM16 | 1e-180 | C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A368QAM3 | 0.0 | A0A368QAM3_SETIT; Uncharacterized protein | ||||
STRING | Si024685m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8680 | 10 | 13 |
Link Out ? help Back to Top | |
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Phytozome | Seita.3G027500.1.p |
Publications ? help Back to Top | |||
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