PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

SBP

Protein Properties

Length: 386aa MW: 41996.5 Da PI: 7.7807

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G022100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2.1e-40	162	240	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Seita.3G022100.1.p 162 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 240 6****************************98725689***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.2E-34	157	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.291	160	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-37	161	241	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.6E-31	163	237	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MMNLSAAANA CDEFPYVASN PAPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNSAA 60 AHHHHSTIAG GHSAHDILQF YPSSHYLASA GNPYSHFSGS TAAFPSYYPP AQAAPEYYFP 120 TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR 180 RHKVCEHHSK APVVVTAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP 240 SDGDAGDKKR AHGNKAAAAK DKAGSSSKNM DIGDGLGTQM LGSALLSKEQ DQAMDLGEVV 300 KEAVDPKGKA SMQQHHGIHQ QNHHGFPFHS SSAGSCFPQT QSVSGDTTSN IAQVQEPSLA 360 FHHQHHQHSN ILQLGQAMFD LDFDH*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MMNLSAAANA CDEFPYVASN PAPPSLLPIM EQESSIQREQ LGYNLEANSL ALLPPSNSAA  60
AHHHHSTIAG GHSAHDILQF YPSSHYLASA GNPYSHFSGS TAAFPSYYPP AQAAPEYYFP  120
TLVSSAEENM ASFAATQLGL NLGYRTYFPP RGGYTYGHHP PRCQAEGCKA DLSSAKRYHR  180
RHKVCEHHSK APVVVTAGGL HQRFCQQCSR FHLLDEFDDA KKSCRKRLAD HNRRRRKSKP  240
SDGDAGDKKR AHGNKAAAAK DKAGSSSKNM DIGDGLGTQM LGSALLSKEQ DQAMDLGEVV  300
KEAVDPKGKA SMQQHHGIHQ QNHHGFPFHS SSAGSCFPQT QSVSGDTTSN IAQVQEPSLA  360
FHHQHHQHSN ILQLGQAMFD LDFDH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-27	163	237	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	249	RRRRKSKPSDGDAGDKKR
2	233	238	RRRKSK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the formation of ligules and auricles during leaf organogenesis.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G022100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ZMU89496	0.0	U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960135.1	0.0	protein LIGULELESS 1
Swissprot	O04003	0.0	LG1_MAIZE; Protein LIGULELESS 1
TrEMBL	K3Z6Z5	0.0	K3Z6Z5_SETIT; Uncharacterized protein
STRING	Si022315m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-42	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Seita.3G022100.1.p
Entrez Gene	101758616

Publications ? help Back to Top
Sylvester AW,Cande WZ,Freeling M Division and differentiation during normal and liguleless-1 maize leaf development. Development, 1990. 110(3): p. 985-1000 [PMID:2088734]