PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G020200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 685aa    MW: 76203.6 Da    PI: 5.032
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G020200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-0797120327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +f++ G C  GdrC+F Hgp
  Seita.3G020200.1.p  97 MVPCYYFQK-GNCLKGDRCPFYHGP 120
                         789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.314369IPR000571Zinc finger, CCCH-type
SMARTSM003560.44568IPR000571Zinc finger, CCCH-type
PfamPF146081.6E-54867No hitNo description
SMARTSM003564.1E-694120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05194121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-498120IPR000571Zinc finger, CCCH-type
PfamPF146080.2799119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEVDGAAEAA AGAAKPLTPG EGGLGGGPRM GNECDFRHSE GARMNPRDCW YWLNGSCLNP  60
KCSFRHPPID GLFSGAPTPG VPPVSSHYGA YNSGKQMVPC YYFQKGNCLK GDRCPFYHGP  120
QGAGNNPTEQ VAKVSSFPVE LPQAKKNEES AAPDNSTQQG ARIIDDRTMV HVAKSVIGAI  180
PTELSSNAVK SRPNSEQAPN NTLAAKKSFT TEEDHPMHYE NLLPVEGDSV QEWNQSFQMP  240
PTDDLPQNSR EADDFLGESS PGFDVLVDND AEGAAYLHDE EDFGRDMYPV EDYEYAPADF  300
DIRAQHESEQ FNGMGENGQI GQLCDGYERK RRRSSSERSM DRPFHSDRRF LHRGPDRDGI  360
DGSDLRHQLR RRRISGPSTA ISPERANGGR HWRDERYRES AHGGHHMHSD RRQGPRGSTL  420
SSRLQARIKL PGRSPDRVDT RFEDERDRRL RERFSPAARL ADFHGSRHRE SGQHQERSHR  480
RSSELVSSAR HADGLSFKRD SVDSARFAAR RNFGEPRKAN GIVESEASLD FEGPKPLSVI  540
LQRKREAAGG NNLASSYDKS AEAAVMQAGS LVESEKKGCD NIIISENCKS GSGDEEYKEE  600
YHVPVEGHGQ SSSHGDKFEV EDAAEVDPER NQEADNYDQR EGESDDYETM EGHDYKSEDE  660
NAYQDDEEFD DDDDFARKVG VVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328332RKRRR
2328333RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G020200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660437.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A368QAK50.0A0A368QAK5_SETIT; Uncharacterized protein
STRINGSi021446m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]