PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G003800.1.p
Common NameLOC101760650, SETIT_025079mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 462aa    MW: 49277.5 Da    PI: 9.1331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G003800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07211233223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +CpdCg+ F r+++L+ H++  H
  Seita.3G003800.1.p 211 PCPDCGEIFVRQESLQLHQSIrH 233
                         7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-4209229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141210238IPR007087Zinc finger, C2H2
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SuperFamilySSF563995.08E-20235282No hitNo description
Gene3DG3DSA:3.90.228.105.1E-13237458IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.08E-20309458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVEPGRSAAA REANKNKSST STGAAMKKKL MSKKPEKEKD GGSGGCRTTR KQSSHCREPE  60
SPSYRLALKS IFSCRNSQQQ PDSGSRSSNK LGCSAPSICK LKDSDSSQSQ RVAQRPAADE  120
TAGEPCKRRA SVSGGSERRV KKPLSEVSSV SKQLQLQRGG SSLSSSSSSG GGSFRASMQL  180
RRLSGCYECH MVVDPGSGSG SSSMRATTVC PCPDCGEIFV RQESLQLHQS IRHAVSELGA  240
DDTSRNIIEI IFQSSWLKKQ SPVCKVERIL KVHNTARTLA RFEEYRDAVK AKAAAQQQQQ  300
PAAKTTKHPR CTADGNELLR FHCATLACEL GLNGATHLCS SSGGGGCGAC AIIRDGFKIN  360
SAGDGGGVRT MATSGRAHDA VAGAPLDQEE EERRCRAMLV CRVIAGRVKR PTQLGEEEEA  420
SSEEFDSVAA SAGVYSNLEE LQVFNPRAIL PCFVVVYKAA Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G003800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682181e-151EU968218.1 Zea mays clone 316720 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959963.10.0uncharacterized protein LOC101760650
TrEMBLK3ZET10.0K3ZET1_SETIT; Uncharacterized protein
STRINGSi025079m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-81C2H2-like zinc finger protein