PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G373900.1.p
Common NameLOC101782362, SETIT_031011mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 231aa    MW: 23398.8 Da    PI: 8.3339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G373900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.6e-2915116197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg++ +++++
  Seita.2G373900.1.p  15 SCNGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWH 105
                         6*********************9999888899*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         l+q+++e++l+
  Seita.2G373900.1.p 106 LCQAAVETVLR 116
                         *****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.72114120IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-2515114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRGGPLDTAV VPAMSCNGCR VLRKGCSEAC VLRPCLQWIE GAEAQGHATV FVAKFFGRAG  60
LMSFLTAVPE PQRPAVFQSL LYEAAGRTIN PVSGAVGLLG AGSWHLCQAA VETVLRGGGI  120
RPLPELDGGV PAADGSFAFT ARRAAGCSTF SAAKRATGRV LNVGAPVAVA GGAPEPSCDL  180
GLCLSPGSPP APGERRPRRP GTPSMTSEES VTTTSGGGGG REPELLNLFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G373900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-162LOB domain-containing protein 37
SwissprotQ9FN112e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK3ZWM91e-160K3ZWM9_SETIT; Uncharacterized protein
STRINGSi031011m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-66LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]