PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G371900.1.p
Common NameLOC101776973, SETIT_029353mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HRT-like
Protein Properties Length: 572aa    MW: 62350.1 Da    PI: 8.7311
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G371900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.59.3e-18306335231
            HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         CGv ledGs C ++Pv+gRKRC  HKG+R+
  Seita.2G371900.1.p 306 CGVVLEDGSSCLEHPVEGRKRCSLHKGRRV 335
                         *****************************7 PP
2HRT-like48.71.3e-15533562130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCG+ + dGs+C+++Pv+gRKRC+ HKG+R
  Seita.2G371900.1.p 533 ICGACTADGSPCMNKPVEGRKRCALHKGQR 562
                         8****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004657.3E-471176IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPAAVTARLK REDCPRTKHD SLFSPWKVLV GPSDWEDHSA GKEGVQRYRI RNLPDNFPGI  60
YELGVAGASD EGVRSRRRDS RGVVVVYLGQ ADSVRARLQQ YGRSGSHLDT GNSLGSAGKA  120
EVNALAAGPG LFREVFSRGY SVVFRCAQMD NKQEAEKTEA QLLRIFDYAW NKLQNGACRC  180
EEILLKLEQG ATSRRSSLLS RVCHSKQDIF GVKAGIKIKG SGSVNTPPGI MKSMLPRVRT  240
FVGFRPQPVN SEDSGGEAID IPWKKISGFP CGNRQAHRRR SGGHRIKKID VAKRRTVPIQ  300
DSNSFCGVVL EDGSSCLEHP VEGRKRCSLH KGRRVKGSPK SSSTSYPCQA EIPIPHLTED  360
LDNSDQTQEI IESIPHLTED LDSSDRTQES KILPQNISTT VEESPRQSNS IKEEEVKTRE  420
APTEDGKHDA SRDACICDCE EKASHAEPES QVPQPSGRMW FELLKARKKS TSADSSRGSG  480
SQTRDYAAPI CGAMADNGSC KVVPNAGRQI CEKDRGIEVA GASFSRSSGW PCICGACTAD  540
GSPCMNKPVE GRKRCALHKG QRGSCTPTPS V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G371900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958167.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLK3ZRX30.0K3ZRX3_SETIT; Uncharacterized protein
STRINGSi029353m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.15e-62effector of transcription2