PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G368600.1.p
Common NameLOC101764951, SETIT_031009mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 231aa    MW: 25541.6 Da    PI: 6.4034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G368600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1958111356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq+e+Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Seita.2G368600.1.p  58 KKRRLSDEQVEALELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 111
                         45589***********************************************99 PP
2HD-ZIP_I/II115.43.4e-3758148292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++ +Lk+a+da   ++++Le+ev +L+e+l+
  Seita.2G368600.1.p  58 KKRRLSDEQVEALELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFGKLKQAHDAAILHKCHLENEVMRLKERLE 148
                         9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.32553113IPR001356Homeobox domain
SuperFamilySSF466895.72E-1753112IPR009057Homeodomain-like
SMARTSM003893.2E-1756117IPR001356Homeobox domain
PfamPF000461.9E-1658111IPR001356Homeobox domain
CDDcd000862.38E-1658113No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1858111IPR009057Homeodomain-like
PRINTSPR000311.1E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.1E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEQYDELFPS AYVDSSSPIM VPNGGAALGE RPRARRRRRR AARCGGDGGE LDGGGDPKKR  60
RLSDEQVEAL ELSFREERKL ETGRKVHLAA ELGLDPKQVA VWFQNRRARH KSKLLEEEFG  120
KLKQAHDAAI LHKCHLENEV MRLKERLEIT EEELARLRSA AGSHAVSGDG GDAMGRVVCS  180
GSPSSSFSTG TCQQPGVRDH LGDDDLLYVP DYACYPDNSV VEWFSLYGLM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13039RPRARRRRRR
23442RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G368600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399590.0BT039959.1 Zea mays full-length cDNA clone ZM_BFc0054M14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958136.11e-169homeobox-leucine zipper protein HOX14
SwissprotQ7XI858e-90HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLK3ZWM71e-167K3ZWM7_SETIT; Uncharacterized protein
STRINGSi031009m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.16e-38homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]