PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 291aa MW: 32122.3 Da PI: 8.3358

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G358600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	262	284	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Seita.2G358600.1.p 262 VCPKCSKGFRDPVLLVEHVEReH 284 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.96E-13	6	50	No hit	No description
Gene3D	G3DSA:4.10.1110.10	5.6E-10	10	49	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.555	10	56	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0064	13	52	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.8E-13	13	50	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.7E-10	91	147	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	4.19E-9	93	144	No hit	No description
PROSITE profile	PS51039	7.82	98	145	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.039	101	142	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.2E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.27	224	247	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	226	247	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.538	261	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.3	261	284	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	263	284	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGTPEFPNLG KHCSVGDCHQ IDFLPFTCDR CDNVFCLQHR SYTTHQCPNA NLKDVTVLIC 60 PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCREAL TFSNTIRCKD 120 CTKEHCLKHR FGPDHKCPGP RKVDSGFPFV NMLRRSQKVE TRPNSSKNNS SSWWSSSLVN 180 AATNFKSSAE AGMQKLSIAT SQAFQKAKDG ISADSSSSSS ELVEECVHCP ARFSTVGALI 240 EHVEKSHQTN QQPSRGRVTI DVCPKCSKGF RDPVLLVEHV EREHGGTSRA *

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G358600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT041206	0.0	BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958078.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-167	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	K3ZVR6	0.0	K3ZVR6_SETIT; Uncharacterized protein
STRING	Si030697m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Seita.2G358600.1.p
Entrez Gene	101775341

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]