PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Seita.2G353500.11.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 937aa MW: 105698 Da PI: 7.2296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G353500.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.2e-26	153	240	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+l+++++ +gk+++t+++ +HnH+la Seita.2G353500.11.p 153 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASLTIRLTANGKYRLTEFVPNHNHQLA 240 6******************97766.************9999.999***********************************97 PP
2	FAR1	83.3	4e-26	282	368	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF+vr+++++ + +++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH+l Seita.2G353500.11.p 282 EFYSMYAGKIGFNVRRASMTVN-TENVITRRMFVCSKEGFREKKRGA-KRVKKPRPETRTGCPACMVIRLGTNGKYQVTEFVTFHNHQL 368 6**************99998.5666************9998.99***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-24	153	240	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.6E-22	282	368	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-22	485	578	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.794	751	798	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-7	751	797	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-7	773	800	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MDWPRAVNLR HRIWTWVLWR GRSSIPTSEI GGSKGPPMPS ALGEKDPQVA PGPATAPPQV 60 QALRPADATG SPVIDPRLAQ QSWPGHVVLL RPCVPWPPQV PVPLLLNAAN PQQNANAMAD 120 VAAADVNPAI DSCDENMLPK VNMLFDGESD AYEFYNAYAE KVGFFVRRST LWTTSKNIIT 180 RRTFVCSREG FREKKKGAKE AKCPRPETRI GCPASLTIRL TANGKYRLTE FVPNHNHQLA 240 TASTIHMLKA KKIRRKARAV RENLVDETVS MPEFENEDEA YEFYSMYAGK IGFNVRRASM 300 TVNTENVITR RMFVCSKEGF REKKRGAKRV KKPRPETRTG CPACMVIRLG TNGKYQVTEF 360 VTFHNHQLGA AAASDLAMAS QSTENDQEDG VDLADRSPDD SVHKQNLINE SATLNSIEGR 420 SCKRYKCTKT PHYGDVGATL EYLQKMQHDN PSFFYAVKSD ENGNFTNFFW ADSKSTVDFV 480 HFGDVVCFDS GYALQGYGRP LALFTGLNHH KQTVIFGAAL LYDESNEAFR WLLDTFKMAM 540 NGNPKTLLTD RSAAISEAVA ATLPATAHRY CVWQIYQNAL QQLSQAFHGS KTLECNFKRC 600 LFDCEDEDEF LTAWKEMLEK YDLEDNQWLA DLYSIKEKWA LPYGRDAFYA DMKSVQQKES 660 LTSELKKHLC LEYDLLNFFE QFERLLCDRR SAELEADVNA NQSTKKPPMR MLRQAANVYT 720 PAAFKMFERE FELYMDCMLY NCGEMGTIFE YRISVEDNPK DHFVKFDSHN SMMNCTCKTF 780 EFIGIPCRHM LKVLDTRNIK DLPVQYIVKR WTKDAKSGSS NGGCAFSFEP ESAQTKRYNL 840 LCRIFSIAAA RAATSAESFT FMENQSNILM DQVEQVIQTR PPDIVDLIGA NCDRTQSSVD 900 NIVAEGIHGH TNFLNGSADG SLTFPFTLGA GALDYR*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MDWPRAVNLR HRIWTWVLWR GRSSIPTSEI GGSKGPPMPS ALGEKDPQVA PGPATAPPQV  60
QALRPADATG SPVIDPRLAQ QSWPGHVVLL RPCVPWPPQV PVPLLLNAAN PQQNANAMAD  120
VAAADVNPAI DSCDENMLPK VNMLFDGESD AYEFYNAYAE KVGFFVRRST LWTTSKNIIT  180
RRTFVCSREG FREKKKGAKE AKCPRPETRI GCPASLTIRL TANGKYRLTE FVPNHNHQLA  240
TASTIHMLKA KKIRRKARAV RENLVDETVS MPEFENEDEA YEFYSMYAGK IGFNVRRASM  300
TVNTENVITR RMFVCSKEGF REKKRGAKRV KKPRPETRTG CPACMVIRLG TNGKYQVTEF  360
VTFHNHQLGA AAASDLAMAS QSTENDQEDG VDLADRSPDD SVHKQNLINE SATLNSIEGR  420
SCKRYKCTKT PHYGDVGATL EYLQKMQHDN PSFFYAVKSD ENGNFTNFFW ADSKSTVDFV  480
HFGDVVCFDS GYALQGYGRP LALFTGLNHH KQTVIFGAAL LYDESNEAFR WLLDTFKMAM  540
NGNPKTLLTD RSAAISEAVA ATLPATAHRY CVWQIYQNAL QQLSQAFHGS KTLECNFKRC  600
LFDCEDEDEF LTAWKEMLEK YDLEDNQWLA DLYSIKEKWA LPYGRDAFYA DMKSVQQKES  660
LTSELKKHLC LEYDLLNFFE QFERLLCDRR SAELEADVNA NQSTKKPPMR MLRQAANVYT  720
PAAFKMFERE FELYMDCMLY NCGEMGTIFE YRISVEDNPK DHFVKFDSHN SMMNCTCKTF  780
EFIGIPCRHM LKVLDTRNIK DLPVQYIVKR WTKDAKSGSS NGGCAFSFEP ESAQTKRYNL  840
LCRIFSIAAA RAATSAESFT FMENQSNILM DQVEQVIQTR PPDIVDLIGA NCDRTQSSVD  900
NIVAEGIHGH TNFLNGSADG SLTFPFTLGA GALDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G353500.11.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062235	0.0	BT062235.1 Zea mays full-length cDNA clone ZM_BFb0229O21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680329.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_022680330.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_022680331.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A368Q740	0.0	A0A368Q740_SETIT; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.2G353500.11.p