 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.2G305800.1.p |
| Common Name | SETIT_032580mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 187aa MW: 19144.1 Da PI: 6.5066 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.2G305800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00025 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C++ F ++ L H++ H
Seita.2G305800.1.p 45 FACNYCHRKFYSSQALGGHQNAH 67
78******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MENELAASGA HGVSLDDLSP RGRRSGPAVA AVPAVDGGRR PGESFACNYC HRKFYSSQAL 60
GGHQNAHKLE RTLAKRSRDI LAAAAPPSSS PPPTPAPPAV VFHAAPPERN NNNRDDDFLL 120
PATYGATWST GAAEDATAAQ QAAPPTPSVV MDMAGWGADT AAAADGGCGR LGHGRNGEEI 180
DLSLKL*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT086880 | 3e-57 | BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds. |
| GenBank | BT086917 | 3e-57 | BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds. |
| GenBank | BT087160 | 3e-57 | BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds. |
| GenBank | EU960522 | 3e-57 | EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds. |
