PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G298700.1.p
Common NameLOC101777377, SETIT_028915mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Nin-like
Protein Properties Length: 887aa    MW: 96994.8 Da    PI: 6.7355
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G298700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.37.3e-29569620152
              RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  Seita.2G298700.1.p 569 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 620
                         5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.746557640IPR003035RWP-RK domain
PfamPF020422.5E-25572620IPR003035RWP-RK domain
SuperFamilySSF542775.56E-22778875No hitNo description
Gene3DG3DSA:3.10.20.2404.2E-25784869No hitNo description
PROSITE profilePS5174521.372788871IPR000270PB1 domain
SMARTSM006664.4E-19788871IPR000270PB1 domain
CDDcd064071.32E-41789869No hitNo description
PfamPF005641.2E-15789869IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MVFLAQDVHG GMEPCLSISS RGEVKCYPDR VTCMEEGGGD PQPSFSLQAR TPSEGGAAVD  60
LDLLEQLLSG DNGWFDVVSR SPNSLASPPP AAFFSADVTA AAVTTTSSST QAASSWWIQT  120
GGASPSSVRD RFSQALSYIR ETQSDGDVLV QLWVPVSRGD GRLVLTTSGQ PFTLDQSSDS  180
LIRFREVSTK YQFSADVKSG DSPGLPGRVF IGRLPEWSPD VRYFTTYEYP RVRDAQYLDV  240
HGTMGLPVFE KGSYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRSA EVSSVPRVQF  300
STASYKNALP EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYP YCISTIDEAC  360
FVNEPEMQDF HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSAKLDYP LSHHAKIFKL  420
KGAVAIRLRC TRTGTADFVL EFFLPTDCQA LEEQKEVLDS LSGTMRSVCQ TLRVVTDKEM  480
EDEAMRETNE LNSFTPQGKN KAEELSFGGN SADRRGEASW TSLAETSQQE SELAALRMHG  540
MFSSGGQGPS LSGVQSAAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL  600
KRICRQHGIT RWPSRKIKKV DHSLRKLQQI IDSVHGAETS FQLNTLYKDL TNTSISSENN  660
LSGSMTIPPT NQSNLTDFDK HQHHKSNSIV PSTSPSHSSC SHNSDSSPSC SGGARKHAPQ  720
GIIDLMKSGN PVKDSPIQTL QTENTSLYEH FSVHEAPTDL LQDVTEKANG GLHSSRSPSS  780
PKQNAEANMR VKATFGSEKV RFRLNPKCDF QELKHEIAKR LSIVDTSSLI LKYLDDDSEW  840
VLMTCDADLQ ECFHVYKLAD IQTIKISVHL AVSPATRVTT GPTGLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G298700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957562.10.0protein NLP1 isoform X1
TrEMBLA0A368Q4I10.0A0A368Q4I1_SETIT; Uncharacterized protein
STRINGSi028915m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein