PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 26082.9 Da PI: 5.0748

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G284000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	30	84	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Seita.2G284000.1.p 30 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 84 67789*************************************************9 PP
2	HD-ZIP_I/II	121.9	3.2e-39	31	122	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l+ Seita.2G284000.1.p 31 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLE 121 79*************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + Seita.2G284000.1.p 122 K 122 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.76E-19	18	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	26	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.4E-20	28	86	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-16	29	90	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-17	30	84	IPR001356	Homeobox domain
CDD	cd00086	4.37E-17	30	87	No hit	No description
PRINTS	PR00031	7.7E-6	57	66	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.7E-6	66	82	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-13	86	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEGEDDGPEW MMEVGGGGGK GGKGGGGLDK NKKRFSEEQI KSLESMFATQ TKLEPRQKLQ 60 LARELGLQPR QVAIWFQNKR ARWKSKQLER EYSALRDDYD ALLCSYESLK KEKHALLKQL 120 EKLAEMMQEP RGKYGGNAGA VAGEDVRSGV GGMKEEFADA GAGLYSSDGA DGGKFAHFTD 180 DDAGALFRPS PQQPAAGFTS SGPPEHQPFQ FHSSCWPSST EQTCSSSQWW EFESLSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	26	GGKGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G284000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087258	0.0	BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957433.1	1e-173	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	6e-98	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	6e-98	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	K3ZWK1	1e-172	K3ZWK1_SETIT; Uncharacterized protein
STRING	Si030983m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-44	homeobox 7

Link Out ? help Back to Top
Phytozome	Seita.2G284000.1.p
Entrez Gene	101759400

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]