PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.2G269400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 281aa MW: 30968.4 Da PI: 6.7038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G269400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	121	168	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Seita.2G269400.1.p 121 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-17	115	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.90E-11	115	172	No hit	No description
PROSITE profile	PS50888	15.542	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-17	117	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-7	121	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-10	123	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MANFSHLSHQ HMEHGLANAS HGTPSFLFCH GTAPADSSSL ETSSGVLDTP PRGTASEDKK 60 IRKTREDCAS LSSAQSKDSN SKESTKKRGG KRERSSKEVD EEEEPKGYIH VRARRGQATD 120 SHSLAERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS 180 LSPVLYGFGM DSDAFSDHTQ KMEGMLHHEA LAMPTSVMNR APSQAIMDTN TSNSSPSYEL 240 HGDGSANITF PQDSGSYMVQ EPRQELFNQV AFSNHMCSFQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G269400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085581	0.0	BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957313.1	0.0	transcription factor bHLH137
TrEMBL	A0A368Q3K6	0.0	A0A368Q3K6_SETIT; Uncharacterized protein
STRING	Pavir.Ba01554.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.2G269400.1.p