 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Seita.2G266500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
SBP |
| Protein Properties |
Length: 451aa MW: 46766.2 Da PI: 7.4165 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.2G266500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 131.1 | 4e-41 | 114 | 190 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
C v+gC+adls++++yhrrhkvCe+hsk+pvv+vsg+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
Seita.2G266500.1.p 114 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVSGREMRFCQQCSRFHLLAEFDDAKRSCRKRLDGHNRRRRKPQP 190
**************************************************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MDWDLKMPVS WDLAELEHDA VPAIAAAAAP PAAAASGIAT VAAAAASARG APSRAECSVD 60
LKLGGLGEFG AADRMKEPAA PVSAAAAAVV PSASPMKRPR SGAGGAGGAQ CPSCAVDGCK 120
ADLSKCRDYH RRHKVCEAHS KTPVVVVSGR EMRFCQQCSR FHLLAEFDDA KRSCRKRLDG 180
HNRRRRKPQP DTMNSGSFMT SQQGLFSSAG TRFSSFPAPR PEASWSGVIK SEDSSYYTHH 240
QVLSARPHFA GSAAAAYSKE GRRFPFLQDG DQVSFGAGAA AAALEASTAC QPLLKTVAPP 300
PPPPESSSSN KIFSDGLTPV LDSDCALSLL SSPANSSSVD VSRMVQPTEH IPVAQPLVPN 360
LHQHQQQHHH HQFGGSPGWF ACSQAGSSGV TAAAGAGGFA ACPGGVEGEP LNTILVPSSD 420
GHEMNYHGIF HVGGEGSSDG TSPSLPFSWQ *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 170 | 187 | KRSCRKRLDGHNRRRRKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT053875 | 0.0 | BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds. |
