PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G263000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 470aa    MW: 49200.3 Da    PI: 8.7934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G263000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08285332455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Seita.2G263000.1.p 285 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 332
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.08E-10279336No hitNo description
SuperFamilySSF474591.13E-16279350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16281349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6285332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLKVGGVPPA TAAAVEPGGN PPPQASHRAA RRDGRGVPAQ PNRSGSSQPA SNHRSIKSIP  60
APTGSKALSL CFAFPQIRRG LESEEKRRPG TTSRHPRFAS CAILGGVPRL SSFSFFPMDS  120
DYVASLLMGH SAAPGLDFTA ALDGGFLDAL CGGGGGAGLF GLPGVAAGAG GGGSPEGSSV  180
SDPAWARARD GGNARKRKTP PAGATSGKEA CLGKAGEAKG PDGKKCRVGA GGSPVKPKVE  240
EATASDGSVE DKGQKKGKGK SSKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR  300
MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK  360
DMYQSCGPSV NSVFPLESAG AAFPFCEQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNQT  420
FAFQKQQRDF WEDGLPNTLP IVSEQSQENG VSAPDFDGQL QADQTKIEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G263000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957264.10.0transcription factor BHLH089
TrEMBLA0A368Q2U40.0A0A368Q2U4_SETIT; Uncharacterized protein
STRINGSi030324m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-50bHLH family protein