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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.2G254300.1.p |
Common Name | LOC101766166, SETIT_030195mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
SBP |
Protein Properties |
Length: 377aa MW: 39105.4 Da PI: 8.972 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.2G254300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 134.6 | 3.2e-42 | 65 | 140 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
+CqvegC +dls ak yh rhkvC++h+k+p v+v+g+eqrfCqqCsrfhel efD++krsCrrrL +hnerrrk+
Seita.2G254300.1.p 65 RCQVEGCGVDLSGAKPYHCRHKVCSMHTKTPRVVVAGIEQRFCQQCSRFHELPEFDQGKRSCRRRLIGHNERRRKP 140
6*************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 377 aa
Download sequence Send
to blast |
METGGSGSGN GGGSDDVHGL KFGKKIYFEQ DAAAGGSGTA AAAAAGGRKG KGVASGGPPP 60 AAPPRCQVEG CGVDLSGAKP YHCRHKVCSM HTKTPRVVVA GIEQRFCQQC SRFHELPEFD 120 QGKRSCRRRL IGHNERRRKP PPGPLTSRYG RLAASFQEPG RFRSFLLDFS YPRVPSSVRD 180 AWPAIQPGGD RMPGTIQWQG NQGIHPHRST VAGYGNHAYI GHGGSVAGPS SVLPAAFELP 240 PGGCVAGVAT DSSCALSLLS TTQPWDATTE SASHNRSPTM SAASAFEGTP VAPSVMASSY 300 ATAASSWATG PRGHVEGSSR NVQHHEDALH LVGHGHFSGE LELALQGSGP SNPPHVHHGS 360 SSGTFGHSSN AMNWSL*
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |