PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G242400.1.p
Common NameLOC101765607, SETIT_030774mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 274aa    MW: 28019.4 Da    PI: 9.4911
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G242400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-3848106462
              zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +  +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss
  Seita.2G242400.1.p  48 AGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 106
                         5679**************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2449100IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.70550104IPR003851Zinc finger, Dof-type
PfamPF027014.3E-3251104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQEPGRRPAP PFAGVDLRRP KGYPAPAARA AEEPASASSA SAQAQPPAGD PCPRCESRDT  60
KFCYYNNYNT SQPRHFCKSC RRYWTKGGSL RNVPVGGGTR KSSSSSSASS SSLAAAPKST  120
KRSKNSKRRR VAPAPDPVPA TEASATTTRV ANNAPVPAPS TVAAAMVVAT GKPTASKPAP  180
PVAAAEKTTA PEPAATVAAM DEKLTAPPAA VGCFTSEPST APGLGLADVG CGGGKELPPD  240
PNHFEWPSGC DLGSYWSTGV FADTDPALFL NLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126130KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G242400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824042e-77KC582404.1 Sorghum bicolor dof7 protein (dof7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957110.10.0dof zinc finger protein MNB1A
TrEMBLK3ZVZ30.0K3ZVZ3_SETIT; Uncharacterized protein
STRINGSi030774m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-28DOF zinc finger protein 1