PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G241500.1.p
Common NameSETIT_029882mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 437aa    MW: 45572.8 Da    PI: 6.356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G241500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09263311355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Seita.2G241500.1.p 263 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 311
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.05E-11258315No hitNo description
SuperFamilySSF474596.41E-17258328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16261327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-7263311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDMNESGEKG MEGNASSAGA GIPVEWQTQF SAAAFACPQA QQHQGPMMDS AFATAGMWAS  60
TSQAMVLSDV GGAMSATRGG GGFLAPVPGF LPQGLGHFPV DSGFIERAAR ASCFGGGGGG  120
GVMGGAGFGA ADQHMNGAFS GSSEALLDHQ RKDGNEKGEP ELGRNGHDGV PSSEAAGGDC  180
SSKGTSDSKK RRRPNEVMGG DQVQSSNLPA DSANESVHSK DKGEESSPAT TTGKSKGKGA  240
KETSESQKED YIHVRARRGQ ATNSHSLAER LRREKISERM KLLQDLVPGC SKVTGKAVML  300
DEIINYVQSL QRQVEFLSMK LATVNPRLDL NIEGLLSKDL LRFPGVSSSS LGFSPEMIHP  360
QLQLSQPGLI QGGAAGMANP DVFRRIIQAQ LSAKDGSQMP HALNGPFSDV AQMGYPSLGS  420
SAQDLSIRPS QDGFQM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G241500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698809.10.0transcription factor bHLH49 isoform X2
SwissprotQ9CAA91e-67BH049_ARATH; Transcription factor bHLH49
TrEMBLK3ZTF20.0K3ZTF2_SETIT; Uncharacterized protein
STRINGSi029882m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]