PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G238000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 347aa    MW: 36698.5 Da    PI: 7.6016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G238000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12119183155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P+a+          + ++   + a+i+  A++++k+L+
  Seita.2G238000.1.p 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPAYaqrviiqrlpRSHHMSGDQASIVGGAINFVKELE 183
                         79***************************9889*****99988888999999**99999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.17E-12117187No hitNo description
Gene3DG3DSA:4.10.280.103.5E-12117187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.507118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13118197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-8124188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALEAVVLAV SQQQGGRFGC GAMAGGPWNG LLGGAEGVMG LSGAGAGSWD AAACSSSMLL  60
RGFQEPDNIL AAVAPPVESG GSVGQEAPAA ATSPAPAPTG RRKRRRTRVV KNKEEVESQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPAYA QRVIIQRLPR SHHMSGDQAS IVGGAINFVK  180
ELEQLLQSLE ARRRSAQGPA AGASGDDGAA PFAGFFTFPQ YSMRAAAAPE HAPADATSRE  240
CAEGEEASGS KPSAVADVEA TMVESHANLR VLSRRRPRQL LRLVVGLQDH RLTVLHLNMS  300
SAGQMVLYSF SLKVEDDCQL TSVDEIAAAA HQIVEKTHQE QGCSLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G238000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957080.10.0transcription factor bHLH94-like
SwissprotQ9C7T46e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A368Q2B80.0A0A368Q2B8_SETIT; Uncharacterized protein
STRINGPavir.Bb02386.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]