PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G224800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 495aa    MW: 52572.2 Da    PI: 9.0393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G224800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-066789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++Cg+ F r  nL+ H r+H
  Seita.2G224800.1.p 67 YVCEICGQGFQRDQNLQMHRRRH 89
                        9*********************9 PP
2zf-C2H211.60.00084146167223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C  C+k +  +s++k H++t+
  Seita.2G224800.1.p 146 ACARCSKAYAVHSDYKAHLKTC 167
                         6*******************98 PP
3zf-C2H210.80.0016175193523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr +++  H+ t+
  Seita.2G224800.1.p 175 DCGRVFSRVESFIEHQDTC 193
                         9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-56490No hitNo description
Gene3DG3DSA:3.30.160.602.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6356789IPR007087Zinc finger, C2H2
SMARTSM003550.00326789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001136166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230145172IPR015880Zinc finger, C2H2-like
SuperFamilySSF569543.92E-5339407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLGFCAPAAG SPPDEATPEP FRSLQIATTA AGAAATTKKK RRPAGTPDPD AEVVSLSPRT  60
LLESDRYVCE ICGQGFQRDQ NLQMHRRRHK VPWKLLKREA GEAARKRVFV CPEPSCLHHD  120
PSHALGDLVG IKKHFRRKHS GHRQWACARC SKAYAVHSDY KAHLKTCGTR GHSCDCGRVF  180
SRVESFIEHQ DTCNAGRARA DASPACGGGV AAASAGSQQQ QAPPPAMSLS RTASSTSPSS  240
DVVISPSAWP GPPMPSPTTA AAFHRFDQVP SPRTLPSEHH RGGGHNLELQ LMPPSSSGAG  300
GGALGMAPFY GAPRSPAVSS RGGAGAATQL LLSIGVGSGD AGERGGEAAL AAARARQEEE  360
EAREQLRQAA AEKAAADEAR AQARRHAELA EQELASAKRM RRQAQVELSR AHALREHAVR  420
QVNATLLQIT CLGCRHKFRA RPPTLADAGP EVACSYVSSV VTEGGDPEVD EPPPLEADGM  480
RRRRQHAMAM DIVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17141195357Zinc finger protein JACKDAW
5b3h_F4e-17141195357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKKRR
23742KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G224800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956971.10.0protein indeterminate-domain 16 isoform X2
TrEMBLA0A368Q2050.0A0A368Q205_SETIT; Uncharacterized protein
STRINGSi029726m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-96indeterminate(ID)-domain 14