 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.2G186800.1.p |
Common Name | SETIT_030262mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
LBD |
Protein Properties |
Length: 364aa MW: 38053.5 Da PI: 6.7285 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.2G186800.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 121.2 | 5.7e-38 | 65 | 165 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
aCaaCk++rrkC+++C+lap+fpa+q+++f n+h+lFG+s+++k+l+++++e+ da+++l+++++ara dPv G+v +i +l++q++q++
Seita.2G186800.1.p 65 ACAACKYQRRKCNPNCPLAPHFPADQQRRFLNAHRLFGVSKIQKTLRRIDPERSADAIKTLIFQSDARAADPVGGCVTIIENLRRQIDQTE 155
7****************************************************************************************** PP
DUF260 92 aelallkeel 101
ela++++++
Seita.2G186800.1.p 156 LELAYVRQQI 165
******9986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MSTSSSSPKP PPPQHLRLHV DTATAATTTN GSAASPGSAS SSHSSRSPRP SASAAAAAGP 60 GQNQACAACK YQRRKCNPNC PLAPHFPADQ QRRFLNAHRL FGVSKIQKTL RRIDPERSAD 120 AIKTLIFQSD ARAADPVGGC VTIIENLRRQ IDQTELELAY VRQQIAIYRR AAAAGGADPA 180 MILPAAASAA TAVAGQDNAG VAVGALYAGQ GPVPAGAGVI FQDQQGYHVL KVDDQNGHPP 240 PQQLYNYFCY GMAGDEATSP DGSVQQQYGF ADAAGVKMGS PAGLGEQLEQ QCRLEAVPFV 300 DAFDVKPQAM PATIEHHGPA GVVRREDKLA AAVLKHDVDQ HMEEPAETAA GAPCELELGF 360 SSF*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG670306 | 2e-44 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |