PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G175000.2.p
Common NameLOC101780340, SETIT_030034mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 292aa    MW: 30961.1 Da    PI: 4.1128
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G175000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06445540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C+ ++ ++   +C+++   lC +C  + H+       Ht++
  Seita.2G175000.2.p  4 LCDFCGAQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                        6*****************************657888889876 PP
2zf-B_box24.94.2e-084789541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+++ ++++   C   +  lC++C  ++H+       H++++
  Seita.2G175000.2.p 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgsstagHKRQT 89
                        7*****************************6688899999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
SMARTSM003362.4E-10147IPR000315B-box-type zinc finger
CDDcd000213.05E-7447No hitNo description
PROSITE profilePS501198.834390IPR000315B-box-type zinc finger
CDDcd000211.11E-54790No hitNo description
PfamPF006431.4E-54790IPR000315B-box-type zinc finger
SMARTSM003360.264890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGALCDFCGA QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS STAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDNNLLDM ASATLMSDLD TCDKPLVGSS SGAGVNLLPL  180
ATDQAAGSVD STTPKVPYTP DKDMFSKDSI YEDFCVDDVD LAFENYEELF GTSHIQTEQL  240
FDDAGIDSYF EVNEVPAGNS TEQPKLVQPA NSNAVSADSG MSNPGVKGSW P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G175000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956568.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
TrEMBLA0A368Q0830.0A0A368Q083_SETIT; Uncharacterized protein
STRINGSi030034m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-78B-box type zinc finger protein with CCT domain