PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G135900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 653aa MW: 72240.1 Da PI: 8.2547 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 137 | 158 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Seita.2G135900.2.p 137 KCTKCSREFCSSINFRRHTRVH 158 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.702 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MRARRSDDHW ARHGPERAFL FLSPPLPSIF LVRSTLGLPF LAASRRRQVE RPPLASSSSG 60 ASPVTSIRQL EMNASRKSSH VTTKDNAETA RDIISTSSQI QSMKVPDAVA AIAQAAAKAN 120 DLPGWPLFSP PKVQLDKCTK CSREFCSSIN FRRHTRVHRR TLKVDKDFPK NRDHLAAFWN 180 KLTVDDASTI LSLSDVVVEG VTGSSILTAL SSWMCKPGYA SLPMAYARAG SELLDLIQTK 240 VSMQLPVSSN ELFSVLDEAS EKTFLCTNTA ACIQKFLFDG EADKIATELK NVVACASYML 300 EQKLVEAWCA EKAAEALRCQ KLLVEEEEAA QKRQAELMER KRMKKLRQKE QRLKDLKDHD 360 VAIQLPKIMD DATCYPGIQS FKAISDPDLH EQEGSQYIQF PPPVTSETDN GFNANLLVED 420 VSCDSGPVMD KGAVLRPQVI SRHHLGRTEK LAENSIISGS AVASKQLALA RSSNYRDPNV 480 CSSPNRNKTW ARKVQAEIEK QCPKHGLDVD DEHNMAPSKN SRVLIGSISV AIEDGSEHLK 540 DFRSKDDPVT PSTKTVKHAS VKMMRPVTHV ENKNEGIPHS DGNSVPAEEK HSCFSGITDE 600 KSYSTCRSAD LAEGEHLRRT VFSSKEATAF LSQRWKEAIA ADHVKLVLCH DK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 345 | ERKRMKKL |
2 | 343 | 353 | KKLRQKEQRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G135900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680015.1 | 0.0 | uncharacterized protein LOC101770765 | ||||
TrEMBL | A0A368PYV3 | 0.0 | A0A368PYV3_SETIT; Uncharacterized protein | ||||
STRING | Si029321m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 8e-96 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G135900.2.p |