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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.2G134700.1.p | ||||||||
Common Name | SETIT_028957mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | BES1 | ||||||||
Protein Properties | Length: 811aa MW: 89499.2 Da PI: 6.6396 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 121.6 | 1e-37 | 183 | 308 | 4 | 125 |
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasasp 90 r++ +E+E++k+RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ + ++ ++ + a p Seita.2G134700.1.p 183 SRRRAREEKERTKLRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSAAAAaqpgPRPVMVAAAPLALP 273 6889999************************************************************655433222255666666666666 PP DUF822 91 esslq.sslkssalaspvesysaspksssfpspssl 125 +s+ ++ s a p+ s ++ p+ss +sp ++ Seita.2G134700.1.p 274 TSPALpLRGISPVAARPI-SHRPAPASSLLLSPPRA 308 666653333333333333.44566666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.5E-36 | 183 | 313 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 4.92E-190 | 367 | 805 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 3.5E-207 | 370 | 804 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 4.1E-115 | 376 | 793 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 407 | 421 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 428 | 446 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 450 | 471 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 454 | 462 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 7.5E-7 | 533 | 542 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 6.4E-77 | 543 | 565 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 616 | 635 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 650 | 666 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 667 | 678 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.4E-77 | 685 | 708 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.5E-7 | 688 | 698 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 6.4E-77 | 725 | 747 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.5E-7 | 776 | 790 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 7.5E-7 | 791 | 805 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MGVGKGRGAC EHVCVRPWPL GTGREAPNHM RPMCGANPPP RPARPFRDGG EGEEATRRRS 60 QACAPPGHRG RPSLHTCRPR AATVPTISLQ ARRRTPRTRE RPRWSPPLVP LPCISLPPFP 120 RGARSGMQQA AGPAEDEDEE MGVKEEDGDE EEEEEDDGYY MDPCPAAVAS PPGVGGGRAN 180 PASRRRAREE KERTKLRERQ RRAITGRILA GLRQHGNYSL RARADINEVI AALAREAGWV 240 VLPDGTTFPS SAAAAAQPGP RPVMVAAAPL ALPTSPALPL RGISPVAARP ISHRPAPASS 300 LLLSPPRAAG AAAASSRPPA DDVPDGGSSS HLLAVPVNVP MDPAVAEDAA VAKQVPEVAP 360 RPPERDFAGT PYVPVYVMLP LGVVNVSGEV VDADELVGQL RVLKAAGVDG VMVDCWWGNV 420 EAHRPQEYNW TGYKRLFQMI RELKLKLQVV MSFHECGGNV GDDVSIPLPH WVTEIGRSNP 480 DIYFTDRAGR RNTECLSWGI DKERVLQGRT AVEVYFDFMR SFRVEFDEYF EDAIISEIEI 540 GLGACGELRY PSYPAKHGWK YPGIGEFQCY DRYLQKNLRR AAEERGHTIW ARGPDNAGHY 600 NSEPNLTGFF CDGGDYDSYY GRFFLNWYSQ MLVDHADRVL MLARLAFEGL NIAVKVSGVH 660 WWYKTASHAA ELTAGFYNPC NRDGYAPIAA VLKKYDAALN FTCVELRTMD QHEVYPEAFA 720 DPEGLVWQVL NAAWDAGLQV ASENALPCYD REGFNKILEN AKPLNDPDGR HLFGFTYLRL 780 SKVLFERPNF FEFERFVKRM HGEAVLDLQA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1bfn_A | 1e-159 | 372 | 803 | 11 | 444 | BETA-AMYLASE |
1bya_A | 1e-159 | 372 | 803 | 11 | 444 | BETA-AMYLASE |
1byb_A | 1e-159 | 372 | 803 | 11 | 444 | BETA-AMYLASE |
1byc_A | 1e-159 | 372 | 803 | 11 | 444 | BETA-AMYLASE |
1byd_A | 1e-159 | 372 | 803 | 11 | 444 | BETA-AMYLASE |
1q6c_A | 1e-159 | 372 | 803 | 11 | 444 | beta-amylase |
1wdp_A | 1e-159 | 372 | 803 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.2G134700.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956905 | 0.0 | EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699441.2 | 0.0 | beta-amylase 2, chloroplastic | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | K3ZQS7 | 0.0 | K3ZQS7_SETIT; Beta-amylase | ||||
STRING | Si028957m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | Seita.2G134700.1.p |
Publications ? help Back to Top | |||
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