 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.2G037900.1.p |
| Common Name | SETIT_030811mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
YABBY |
| Protein Properties |
Length: 168aa MW: 18678.1 Da PI: 9.0345 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.2G037900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 231.3 | 2.4e-71 | 3 | 157 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93
+++se+vCyv+Cn+Cntil+v+vP+++++++vtv+CGhCt++ls++l+ ++q++++ + +++ +++++ +n+ s++ ++++ +
Seita.2G037900.1.p 3 GQFASEHVCYVNCNYCNTILVVNVPNNCSYNIVTVKCGHCTMVLSMDLSPFHQARTVPES-------QVVPNRGFQYNNFGSYEAASRNLR 86
5789****************************************************9996.......7999************99998877 PP
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
t+ s++ +s+n+ + vpp +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl
Seita.2G037900.1.p 87 TQ-SMYPMSNNQPQ----VPP-VRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
65.66677877755....445.8****************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MSGQFASEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVKCG HCTMVLSMDL SPFHQARTVP 60
ESQVVPNRGF QYNNFGSYEA ASRNLRTQSM YPMSNNQPQV PPVRPPEKRQ RVPSAYNRFI 120
KEEIQRIKTS NPEISHREAF SAAAKNWAHL PRLHFGLSVA DGGGGSS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU963149 | 1e-168 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. |
| GenBank | EU970658 | 1e-168 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. |
| GenBank | KJ727990 | 1e-168 | KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ohmori Y,Abiko M,Horibata A,Hirano HY
A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.
Plant Cell Physiol., 2008. 49(8): p. 1176-84
[PMID:18593744] - Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY
Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.
Plant J., 2011. 65(1): p. 77-86
[PMID:21175891] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Tanaka W, et al.
The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
Plant Cell, 2012. 24(1): p. 80-95
[PMID:22286138] - Yang C,Ma Y,Li J
The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
J. Exp. Bot., 2016. 67(18): p. 5545-5556
[PMID:27578842]
|
