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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.2G025300.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
TALE |
| Protein Properties |
Length: 353aa MW: 38276.1 Da PI: 6.524 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.2G025300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30 | 8.9e-10 | 278 | 313 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
Seita.2G025300.1.p 278 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 313
4679*****************************885 PP
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| 2 | ELK | 37.8 | 4e-13 | 233 | 254 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLl+KYsgyL+sL+qEFs
Seita.2G025300.1.p 233 ELKYQLLKKYSGYLSSLRQEFS 254
9********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MDQSFGNLGA GGSSSGGSNS AKAAAASSSF LQLPLSTAAA AGAASPAGVA YYGAPLALLH 60
QAAGPSSSSQ SPYGRHAAEI SPAEAEAIKA KIVAHPQYSA LLAAYLDCQK VGAPPDVMER 120
LTAMAAKLDA RPPGRHEPRD PELDQFMEAY CNMLLKYREE LTRPIDEAME FLKRVEAQLD 180
SIAGSATGGG SSAARLSLAD GKSEGVGSSE DDMDPSGREN EPPEIDPRAE DKELKYQLLK 240
KYSGYLSSLR QEFSKKKKKG KLPKEARQKL LHWWELHYKW PYPSETEKIA LAESTGLDQK 300
QINNWFINQR KRHWKPSEDM PFVMMEGFHP QNAAALYMDG TFMADGMYRL GS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033361 | 0.0 | BT033361.1 Zea mays full-length cDNA clone ZM_BFb0146E21 mRNA, complete cds. |
| GenBank | KJ727569 | 0.0 | KJ727569.1 Zea mays clone pUT5429 HB transcription factor (HB132) mRNA, partial cds. |
| Publications
? help Back to Top |
- Sato Y, et al.
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J., 1999. 18(4): p. 992-1002
[PMID:10022841] - Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Plant Cell, 2001. 13(9): p. 2085-98
[PMID:11549765] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Yin H, et al.
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Planta, 2013. 237(1): p. 15-27
[PMID:22956125]
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