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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.1G372800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
C2H2 |
| Protein Properties |
Length: 346aa MW: 35955.7 Da PI: 7.6505 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G372800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.1 | 0.00058 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C+k+F++ L H +H
Seita.1G372800.1.p 140 YECKTCNKCFPTFQALGGHRASH 162
99**********99999998887 PP
|
| 2 | zf-C2H2 | 11.7 | 0.0008 | 240 | 262 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg F + L H+r+H
Seita.1G372800.1.p 240 HECSICGAEFASGQALGGHMRRH 262
78********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MHTPEAVEAP PPLLVMPTSS TEHSAGELDR HHPQPPLTVV KRKRTKRPRH HPPASSSASS 60
SESTTTEEED MAHCLILLAQ GAGGGSSGAH AAVDSKHSPS LSPPPAAAPP APAKSERYTS 120
RKYTEAVTTA DGVKAGFYVY ECKTCNKCFP TFQALGGHRA SHKKPRIAGT DDEIVLTTTT 180
TTTIKQQQKP PMMATASPAP APAPLLQPQT TIDVAVFPDV TTALSLNSVA MTTTTKLRVH 240
ECSICGAEFA SGQALGGHMR RHRPLNAPER AVTAIAAAAD TTKKEAGSAG INLELDLNLP 300
APSDEEALSL PAAAPPAVVL GLGQFSNGNK GGLMLTASAL VDCHY*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003989 | 1e-54 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. |
| GenBank | AP004026 | 1e-54 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. |
| GenBank | AP014958 | 1e-54 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-54 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
