PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G370300.1.p | ||||||||
Common Name | LOC101771942, SETIT_019563mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 20741.5 Da PI: 5.8859 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + F++ L H+++H Seita.1G370300.1.p 50 YKCTFCRRGFPTAQALGGHMNVH 72 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-6 | 47 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 48 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.8E-6 | 50 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDLSQETNKD EGARTSSPSG EADDDKEELM QKQQRAGSGD EDDEGTRQPY KCTFCRRGFP 60 TAQALGGHMN VHRRHRGRPA APAAAAQGSS SSCYEQQPYV YSTTRTMPVL AAFGQTHPAA 120 SGASMAAGGG LLHAAELQRP YELRLFGRDC AAGGRGKEGG AGDVHRDRCY ARDGDGGDHG 180 GGEELDLELR LGGAAGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G370300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971833 | 3e-54 | EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955289.1 | 1e-140 | zinc finger protein 7 | ||||
TrEMBL | K3YZ55 | 1e-139 | K3YZ55_SETIT; Uncharacterized protein | ||||
STRING | Si019563m | 1e-140 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 3e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G370300.1.p |
Entrez Gene | 101771942 |