PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G351300.1.p
Common NameLOC101784621, SETIT_016546mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 680aa    MW: 73556.5 Da    PI: 6.6909
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G351300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28212265155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Seita.1G351300.1.p 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVDKLTRENVASHLQKYRL 265
                         79*******************.********************************8 PP
2Response_reg78.32.7e-26231311109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++ge +++ + 
  Seita.1G351300.1.p  23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAAIALRMLRENRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGETKTVMKG 111
                         799********************.***************99999********************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+  eel++
  Seita.1G351300.1.p 112 ITHGACDYLLKPVRLEELRN 131
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1871679IPR017053Response regulator B-type, plant
SuperFamilySSF521722.56E-3620147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-4220144No hitNo description
SMARTSM004481.3E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.71922137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.93E-2724136No hitNo description
SuperFamilySSF466894.48E-20209269IPR009057Homeodomain-like
PROSITE profilePS5129413.683209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-30210270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25212265IPR006447Myb domain, plants
PfamPF002491.2E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MRPEERNGAM GRVRDQFPAG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NQAAIALRML  60
RENRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS GNGETKTVMK GITHGACDYL  120
LKPVRLEELR NIWQHVVRRK FSNRERANVD GYEECNRPSN ADFDNVHSQI TCGSPDQSGR  180
PSKKRKEYHS EEEDEGEESN GQENDDSSTP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK  240
RILELMNVDK LTRENVASHL QKYRLYLKRL SAVASQQASI VAALGGSDPF MHMGAFEGLQ  300
GYQAFTSSAP LSSFSPQGLL NRNNPTSFGI QGMCASRPIQ IATGNSTISH SVGDVNKYHL  360
SFPGTSNRPG NLAQGLATSV GQVQVPQKWI QEETHDLSTI ISGNGLVNGV PGTLRSATNS  420
PLLQQDLVEC RHAKIVIQPS SSVNSEHLEC TAGVSSSLMD SHVSQQSGVS LSAFSASALP  480
MNGSFGSTNV AKLGATSSGG TNICSSNGLR VARDNEVGAT SLGSVILLPP DTAQNQKYLN  540
FGGGSSLRHN MDGGNRDSVL DSKLVWSSLP TSQPPSTIRS HHPLNQRSNN GTLGVKMIEQ  600
TSASASTAAP QTKFDMFTSG DILTAKNALD SSFPRLNSEL SSSSCSFDGL LNSIIKVEKD  660
DTSFNDDLGC DFYSLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G351300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLK3YQK30.0K3YQK3_SETIT; Two-component response regulator
STRINGSi016546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-110response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]