PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G333300.1.p
Common NameSETIT_017003mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 285aa    MW: 30488.1 Da    PI: 6.1763
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G333300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.11e-1293181397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         +q+lws+ De++lL +   f+++tg  p   d  a++  + +sis ++ +    +K+ rL  Kf +  +        s + +hd+ + +ls
  Seita.1G333300.1.p  93 VQSLWSDADEVTLLAAAAAFRERTGRVPRLpDAAALFGSIGDSISPHIDEAKAYDKLSRLESKFLHGASG-------SPAGTHDRRVHDLS 176
                         799***********************77766*********************************998888.......78899********* PP

              DUF573  93 kkiWg 97 
                          k+Wg
  Seita.1G333300.1.p 177 TKVWG 181
                         ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-1394181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPSDQLSAST VDADAAPASL SSPRWKKPSS GPHPRTGDCD RGPNPSPLGA PSCRSELKRR  60
LRESAEAARG SGDGGRQRLG LAGVTVGVGH GAVQSLWSDA DEVTLLAAAA AFRERTGRVP  120
RLPDAAALFG SIGDSISPHI DEAKAYDKLS RLESKFLHGA SGSPAGTHDR RVHDLSTKVW  180
GLANVVSPPE DDSDGQDAEE SCNASTVMPV VTEVLAEYWK MNERALAGFP LEKGLSLLSK  240
KEGRLMETRW RKQLDEEMQT QMQRHDLAKE ICVLLNDTVK DLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G333300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954046.29e-83uncharacterized protein LOC101785158
RefseqXP_025825361.12e-83uncharacterized protein LOC112900770
RefseqXP_025825369.12e-83uncharacterized protein LOC112900770
RefseqXP_025825375.12e-83uncharacterized protein LOC112900770
TrEMBLA0A368PSA80.0A0A368PSA8_SETIT; Uncharacterized protein
STRINGSi017003m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.11e-07DNA-binding storekeeper protein-related transcriptional regulator