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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G327200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26405.6 Da PI: 9.3304 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.2e-10 | 128 | 161 | 1 | 37 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 +rr+h ++Er+RR+++N+ ++ Lr+++P++ ++++ Seita.1G327200.2.p 128 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQR 161 79***************************7...3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.14E-8 | 126 | 169 | No hit | No description |
SuperFamily | SSF47459 | 2.91E-9 | 126 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-8 | 126 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.525 | 127 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 128 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MALEAVVFPK EHLACTAKAG VAAHLASLGC GFDIDDLEEK GGVVLQEEAA AAALPLGASA 60 ATAWDAALCP CSVAPGAVEE CWDAQRRLSA SPPPVPVAPG RGKAAASAAR RRRRRPKAVK 120 NTEEMESQRR NHIAVERNRR RQMNEYLAVL RSVMPPSYAQ RVRTSTISMA PAVLSVHRAL 180 RQHRPSCKSF AGHVTMHVHE RLGVHRVVDC RCPPNFYCKG RQILLPPGLA WPSADCCCLA 240 ALGLV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 114 | RRRRRR |
2 | 129 | 139 | RNHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G327200.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094552 | 3e-70 | FP094552.1 Phyllostachys edulis cDNA clone: bphylf024j19, full insert sequence. | |||
GenBank | FP098739 | 3e-70 | FP098739.1 Phyllostachys edulis cDNA clone: bphyst010j12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953984.1 | 1e-110 | transcription factor bHLH94 | ||||
TrEMBL | A0A368PRM7 | 1e-176 | A0A368PRM7_SETIT; Uncharacterized protein | ||||
STRING | Si017701m | 1e-109 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G327200.2.p |