PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 177aa MW: 20412.7 Da PI: 9.0913

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G318600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78	1e-24	65	111	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +k +++e +s++F +pik+AA+eL+v++TvLK++CR++GI+RWPhRk Seita.1G318600.1.p 65 KKALTFELVSRHFCMPIKQAAQELNVGVTVLKKRCRELGIPRWPHRK 111 689*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.687	53	135	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-21	68	111	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MNLYELGCLS EVDFASLWAQ VEEDDARRKS KEGDCEKALI KLEPGSGSVQ KCAEMQGHRR 60 SVLGKKALTF ELVSRHFCMP IKQAAQELNV GVTVLKKRCR ELGIPRWPHR KELGKLTEQE 120 DGNLTKSKVE SLQQEKKLIE ERPEVMLDER TKELRQMCFK EKFKRRQQLI MGHGTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G318600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955211.2	1e-123	protein RKD3
Swissprot	Q9FGD1	3e-28	RKD3_ARATH; Protein RKD3
TrEMBL	A0A368PRC3	1e-125	A0A368PRC3_SETIT; Uncharacterized protein
STRING	Si019159m	1e-121	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-30	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Seita.1G318600.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]