PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G314900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 413aa    MW: 45499.6 Da    PI: 9.6923
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G314900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.73.9e-2358123171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rkeksL+ll+++f+ l+ + + + + l+e+ak+L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Seita.1G314900.1.p  58 RKEKSLGLLCSNFMVLYDRDDVESIGLDEAAKSL---GV--ERRRIYDIVNVLESVGILVRKAKNRYTWIG 123
                         79****************9999************...**..****************************98 PP
2E2F_TDP80.61.4e-25202282171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Seita.1G314900.1.p 202 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKiqqgdTRKPAFRWLG 282
                         79*****************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-2654124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.83E-1657122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.5E-2858123IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2059123IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-23199283IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-32202282IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-20203282IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.12E-13204283IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLMAMAASSS SVAEVAVAAA AAAAMESALP QHQQQEARPR PMLAGGGAAK SRHHAYSRKE  60
KSLGLLCSNF MVLYDRDDVE SIGLDEAAKS LGVERRRIYD IVNVLESVGI LVRKAKNRYT  120
WIGFDGVPMA LRELKERALR EKSGLAPLQT EQQSASTMSD DEDDDKLGNP DGDIENEKLS  180
QTMDNPSDKP GAPRCRLRSD HRKEKSLGLL TQNFVKLFLT MEVDTISLDE AAKLLLGEGH  240
EETNMRTKVR RLYDIANVLS SLNLIEKIQQ GDTRKPAFRW LGRAAKPSTE NSVTVAVPPP  300
GKSVSNKRAF GTDITNTDML RSNLHSKIQK KAKLGERGDI LKNCKVAVQS RLGQGKNNGF  360
VYGPFHPAGA RKHELDGGNK PGQRERAEDW ESLSVSFRPQ YQNQDKLFFL AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A8e-38572743228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G314900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682371.10.0E2F transcription factor-like E2FE
TrEMBLA0A368PRM90.0A0A368PRM9_SETIT; Uncharacterized protein
STRINGSi019635m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-89DP-E2F-like 1