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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.1G286100.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
NF-YC |
Protein Properties |
Length: 195aa MW: 22120.6 Da PI: 7.0583 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.1G286100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 170.2 | 2.5e-53 | 23 | 127 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88
ql+ fw++q ie++tdfknh+lPlarikki+kad+dv+misae+Pv+++kac +fileltlrsw+h+eenkrrtl+k diaaa+trtdi
Seita.1G286100.1.p 23 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADKDVRMISAEVPVVFAKACKVFILELTLRSWMHTEENKRRTLQKYDIAAAITRTDI 113
89******988889***************************************************************************** PP
NF-YC 89 fdflvdivprdelk 102
+dflvdi+prde+k
Seita.1G286100.1.p 114 YDFLVDIIPRDEMK 127
***********975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MGVGSQPYPA AAAYAPLTMH QQQLREFWTT QMDEIEQTTD FKNHTLPLAR IKKIMKADKD 60 VRMISAEVPV VFAKACKVFI LELTLRSWMH TEENKRRTLQ KYDIAAAITR TDIYDFLVDI 120 IPRDEMKEEG LGLPRVGLPA AMGPQLIIVL IHITMCQHSR YDVWWPAGSP NDVYVAEAAR 180 ARGRAPEEQQ QQSP*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT041629 | 0.0 | BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds. |
GenBank | EU970712 | 0.0 | EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds. |