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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.1G285400.2.p |
| Common Name | LOC101759100, SETIT_019192mg |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
bHLH |
| Protein Properties |
Length: 476aa MW: 52853.9 Da PI: 5.6098 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G285400.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.5 | 1.8e-11 | 275 | 321 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ Lr+l P++ +K++ a+i+ A+eYI++L
Seita.1G285400.2.p 275 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 321
68899***********************.....9***************998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTNAEQQN FIGLAPFSIE DHSSPANLTS 60
EPARVIDHIQ HQLGIGEEQD HSSHMIQEVP PVETANLVPA IYGVQDHIIS HQIGEGPHNI 120
TVEQQILDYD AASYQNGAYA AGHDLLNSLH IQRCSLTPEF PSTEHFFGGP EQNTVNHLDM 180
NNDLPGAAIH ESGIMFSDST LPSSYHATQS HMLKDLYHSL PQNYGLFTSD DERDGMIGIP 240
GVSGNTFQEI DGRQFENSIL GSRRQKGGLG KGKGKANFAT ERERREQLNV KYGALRSLFP 300
NPTKNDRASI VGDAIEYINE LNRTLKQLRI LMEKKRNSTD RRKKLKLDDE AADDGESSSM 360
QPVSDDQNNQ MNGPIRSSWV QRRSKECDVD VRIVDDEINI KFTEKKRANS LLCAAKVLEE 420
FHLELIHVVG GIIGDHHIFM FNTKIPKGSS VYVCAVAKKL LEAIEMKNQA LNIFN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962797 | 0.0 | EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
