 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.1G275400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
MYB_related |
| Protein Properties |
Length: 464aa MW: 49542.4 Da PI: 8.5793 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G275400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT++E++++++a +++G W++I +++g ++t+ q++s+ qk+
Seita.1G275400.1.p 59 REKWTEDEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
789*****************88.*********.************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0010600 | Biological Process | regulation of auxin biosynthetic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MAYLEENQLA TDEVAVAVGA GGEAAVDHRK DPLDPSDMDL SGEEHVPKAR KPYTITKQRE 60
KWTEDEHKRF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFTKVVRE SSGSNTAGGA 120
APAIQIPPPR PKRKPAHPYP RKVDGAAKKH VPALKQLEKP PLRTQSLRDQ DDGSPTSVLT 180
TARTVLRAEA LGSVFANSSS GSRSPAPSAT GSDEPSSVDR EDGCVSPSVA TAELVARTAN 240
TKVFGDGKVS CIGTEASVFK LFGKKVVVKD PLEHLKTDAS ATSVAQATRN AIPFGAAEGS 300
SWNPWPTGVQ MQQLMYFVPQ PDGFAAQSAV PWLAYNGALP CALFYPQAAA PSAQHHHHNQ 360
PSEPLNHKRV QREESLTGSN TASSAVPAAS AAQNSDAAES HGPRQENTSE SAIAVPRLTK 420
CPSSASFSRR GFVPYKRCAA ESEAPRPVAA GEEADGELTR LCL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU965182 | 1e-132 | EU965182.1 Zea mays clone 284337 hypothetical protein mRNA, complete cds. |
