PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 291aa MW: 31716.7 Da PI: 9.4979

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G272700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	40	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Seita.1G272700.1.p 40 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 84 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-17	34	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	35	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-7	38	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-18	38	87	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-11	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-11	40	84	IPR001005	SANT/Myb domain
CDD	cd00167	1.51E-8	42	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVSASTPPLP PPTQPQSDAA GSGEDASKKV RKPYTITKSR ESWTEQEHDK FLEALQLFDR 60 DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTSEHVPPP RPKRKAAHPY PQKASKNEPN 120 YGLKTDSSSI HRNSGMNATV SSWAVSSIPP AVASSMVKED LGPGTLGPNN FCSSSTEGPP 180 RTWQPGETND QINQVPSLRL MPDFAQVYSF LGSVFDPSTS GHLQKLKEMN PIDVETALLL 240 MRNLSINLTS PDFEDQRKLL SSYSTSGGLE LGSSRSSALA TSAPFMIKGE *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00625	PBM	Transfer from PK02532.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G272700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679446	0.0	HF679446.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB40 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953449.1	0.0	protein REVEILLE 6 isoform X1
Swissprot	Q6R0H0	1e-98	RVE3_ARATH; Protein REVEILLE 3
Swissprot	Q8H0W3	1e-98	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	K3YUN1	0.0	K3YUN1_SETIT; Uncharacterized protein
STRING	Si017977m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	6e-80	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Seita.1G272700.1.p
Entrez Gene	101758291

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]