PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G268600.1.p | ||||||||
Common Name | LOC101780034, SETIT_016736mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 586aa MW: 60212.4 Da PI: 8.7508 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Seita.1G268600.1.p 88 FVCEVCNKGFQREQNLQLHRRGH 110 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00082 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ Seita.1G268600.1.p 165 WKCDKCSKRYAVQSDWKAHSKVC 187 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.1E-6 | 87 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.24E-7 | 87 | 110 | No hit | No description |
SMART | SM00355 | 0.0041 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 3.8E-5 | 88 | 110 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 130 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 153 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.24E-7 | 160 | 185 | No hit | No description |
SMART | SM00355 | 140 | 165 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDGG DHQDQIKPLL TQQQLPPAPL LSAAASSSAG SGQAPAASPP 60 VKKKRNLPDP DAEVIALSPK TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKD 120 PLQAQRRRVY LCPEPTCAHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKVCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES ARLPPPGLTA SHLYGATSAA 240 NMALSLSQVG SHLASTLGGD AHGHHQDLLR LGGGGGAAGR FDHLLGPSGA SAFRPLPPPP 300 SSAFLMGAPQ EFGDGGDGTG PHVFLQGKPF HGLMHLPDLQ GNGAGGGPSA SSAPGLFNLG 360 YIANSANSSG TSSHGHTSQG HLTSDQFSEG GGGGGGGGSE SSAAMLFSGG GSFAGGDHQV 420 APGGGVYNDQ AVMLPQMSAT ALLQKASQMG SSSSAPGGAS VFGGLGGSSA PPSAAHGRAP 480 MLDQSQMHLQ SLMNSLAAGG MFGGGANSGG MIDPRMYDMD QDVKFSQGRG GAEMTRDFLG 540 VGGSGGVMRG MPVVRGEHRD GASDMSSLEA EMKSASSSFT GGRMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-35 | 161 | 223 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 8e-35 | 161 | 223 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G268600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054258 | 0.0 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953416.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_022681782.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_022681786.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | K3YR42 | 0.0 | K3YR42_SETIT; Uncharacterized protein | ||||
STRING | Si016736m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-102 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G268600.1.p |
Entrez Gene | 101780034 |