PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G262900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 698aa    MW: 72781.8 Da    PI: 6.3249
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G262900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.95.1e-843396963374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+l+f
  Seita.1G262900.1.p 339 DELAAAAKAAEAGNSVGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GHHGACRLTSPLDVALKLAAYKSFSDLSPVLQF 424
                         7899*************************************************.....6777889999999******************** PP

                GRAS  94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         +++ta qa+l++++g+   ++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s +s++  el+ t++++a+fA+ lg+pfef
  Seita.1G262900.1.p 425 TNFTATQALLDEIAGStaACIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSTASHHPLELRLTRDNIAQFAADLGIPFEF 515
                         ***************988899***********************977555589************************************** PP

                GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         n++   + +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+v+ +++  d+ + +F ++fl++++ ++ l+
  Seita.1G262900.1.p 516 NAV---SADTINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILRLVKQLGPKIVIAIDHGGDRADLPFSQHFLNCFQSCVFLL 596
                         **8...7788999888666569*******99776665...44....556****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         dsl+a  + + + + k+E++l++++i+++v  +g++      + + Wr+++ + GF pvp s+ a +qa++ll++v+++g++ve+    l+
  Seita.1G262900.1.p 597 DSLDAA-GIDPDSAFKIEKFLIQPRIEDMVLGRGKA-----DKPMAWRSAFAAGGFAPVPPSNLADAQADCLLKRVQVRGFHVEKCGVGLT 681
                         ***888.788899*********************99.....88999********************************************* PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l+W++ +Lv+vSaWr
  Seita.1G262900.1.p 682 LYWQRGELVTVSAWR 696
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.889311676IPR005202Transcription factor GRAS
PfamPF035141.8E-81339696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MRAALFGAER SGAADLVGGG KVLFWPEGKA RALVEPRSVL DCTLSHSPNN SKSTLSSSLG  60
GGAADSTGVA APTKWGSHGE HGGGGKEDWA GGCELPPIPA GLDMGLVGGD NWDAVLGNAA  120
AAGQDQTFLN WIIGAAGDLD QPGPPLPVHQ QPLLDNAGFG FPAADPPGFS LDPHLGGVAS  180
DMSSPGAVSH TTNSGGGSKA SSAFGLFSTE SASLQPPPPP VLFHEGIDTK PPLLGAQPPG  240
PLLHQFQHQP PPTTTFFMPL PSFPNHNQQS PLLQPPPKRH QSMGDDLYLA RNRAAAAAQG  300
LPFPPLHGPA PFQLQPSPPP PHGAMKTTAA EAAQQQLLDE LAAAAKAAEA GNSVGAREIL  360
ARLNHQLPPL GKPFLRSASY LKEALLLALA EGHHGACRLT SPLDVALKLA AYKSFSDLSP  420
VLQFTNFTAT QALLDEIAGS TAACIHVIDF DLGVGGQWAS FLQELAHRRG AGGAALPFVK  480
LTAFVSTASH HPLELRLTRD NIAQFAADLG IPFEFNAVSA DTINPAELIS TTGDEVVAVV  540
LPVGCSARAP PLPAILRLVK QLGPKIVIAI DHGGDRADLP FSQHFLNCFQ SCVFLLDSLD  600
AAGIDPDSAF KIEKFLIQPR IEDMVLGRGK ADKPMAWRSA FAAGGFAPVP PSNLADAQAD  660
CLLKRVQVRG FHVEKCGVGL TLYWQRGELV TVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2241269680375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G262900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682654.10.0scarecrow-like protein 27
TrEMBLA0A368PPT90.0A0A368PPT9_SETIT; Uncharacterized protein
STRINGSi016508m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-81GRAS family protein