PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G261200.1.p
Common NameSETIT_019899mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 571aa    MW: 60613.4 Da    PI: 6.3767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G261200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05113130219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F+++ +L  H
  Seita.1G261200.1.p 113 VCENCGKEFTSWKSLLDH 130
                         6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-53557IPR007087Zinc finger, C2H2
SMARTSM003551.63557IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.63E-63557No hitNo description
PROSITE profilePS501578.9333557IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576677.63E-6107132No hitNo description
SMARTSM00355180112132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39112139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7272295No hitNo description
PfamPF139124.6E-9273297IPR007087Zinc finger, C2H2
SMARTSM003550.13273295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221273300IPR007087Zinc finger, C2H2
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7384411No hitNo description
PfamPF139127.9E-13388412IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995389411IPR007087Zinc finger, C2H2
SMARTSM003551.6389411IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280391411IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MAMVMENQQP LARMPLVPAP PVPPPPPPLP QAYKHRCKVC KKGFMCGRAL GGHMRAHGVT  60
DDGLSADDAL DDDSVPCGGG DSSEAGSAST ATATVKRMYA LRTNPGRLRN CRVCENCGKE  120
FTSWKSLLDH GRCNYDEEEG DLDGNIGDAD NDGEEGEELA LASGWSKGKR TRRAKVMVVG  180
NGFITDEQLP APSSEEEDLA NFLVKLSSSS SATQPHVIIE DDQESCVVSK DAQMNQLLVP  240
QPISMIAPVP QLKLLAPPQV LPHHVSTVPR GMFECKACKK VFTSHQALGG HRASHKKVKG  300
CFAAKLESNR NDPPQPIVSS ASDKVIVDAI PAMVGTERNP TSVNGNAEGD AVNIGTSVVA  360
MATAAPEMAV DEVPAPSTAA PFKKKGKVHE CSICHRVFMS GQALGGHKRC HWLTTGAGDP  420
NAAVAKLQPF VTQDHVMHAM CQQLTLGRPM FDASDTFLDL NVPSNPSAEP AAARQAAELN  480
DSVLSLNAPA SLYMHSWAGH SNASNMNNRA TSGHYDAAEA TATEDEADSR GAKRAKIRDL  540
KDMNMGGESS PWLQVGIGLP SKIDEKATQA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G261200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075592e-33AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050722e-33AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052892e-33AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149582e-33AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-33CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955118.10.0uncharacterized protein LOC101782881
TrEMBLA0A368PPR90.0A0A368PPR9_SETIT; Uncharacterized protein
STRINGSi019899m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-19C2H2 family protein