PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

YABBY

Protein Properties

Length: 257aa MW: 26896.7 Da PI: 8.0253

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G251600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.4	8.7e-67	21	214	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshl..deslkee.................lle 73 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ + +a s+l ++sl + l++ Seita.1G251600.1.p 21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppAAPPAASQLsfGHSLLSPtsphglldefalqapsiLMD 111 578******************************************99866555556665511344444478889666666555553333 PP YABBY 74 elkveeenlksnvekeesastsvssekl...............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdis 148 + + ++ ++ ++++ +++ e+++ p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+ Seita.1G251600.1.p 112 QASANLSSATTGRSNSS----------CgsnlpaapmpaakppAVQQEPELAKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIT 192 33333333333333333..........133334444478888766666677766555****************************** PP YABBY 149 hreafsaaaknWahfPkihfgl 170 hreafsaaaknWahfP+ihfgl Seita.1G251600.1.p 193 HREAFSAAAKNWAHFPHIHFGL 214 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.0E-70	22	214	IPR006780	YABBY protein
SuperFamily	SSF47095	1.23E-7	157	207	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-4	163	206	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0009933	Biological Process	meristem structural organization
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010093	Biological Process	specification of floral organ identity
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010159	Biological Process	specification of organ position
GO:0010450	Biological Process	inflorescence meristem growth
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMSSSSSSSS AAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LLSVNLRGLL LPPAAPPAAS QLSFGHSLLS PTSPHGLLDE FALQAPSILM DQASANLSSA 120 TTGRSNSSCG SNLPAAPMPA AKPPAVQQEP ELAKSAPSVN RPPEKRQRVP SAYNRFIKDE 180 IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKTFKAQDGA EDMLLKDGLY 240 AAAAAAAAAN MGITPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00620	PBM	Transfer from AT2G45190	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G251600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU960773	0.0	EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953265.1	0.0	protein YABBY 4
Swissprot	A2X7Q3	1e-128	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-128	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	K3YV50	0.0	K3YV50_SETIT; Uncharacterized protein
STRING	Si018146m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-63	YABBY family protein

Link Out ? help Back to Top
Phytozome	Seita.1G251600.1.p
Entrez Gene	101755314

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]