PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G241500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 787aa    MW: 84320.8 Da    PI: 8.9318
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G241500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23212313199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  Seita.1G241500.1.p 212 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 299
                         89*****************************96555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Seita.1G241500.1.p 300 -RGDGGDLHVGIRRA 313
                         .3488999*****97 PP
2Auxin_resp116.71.9e-38367450183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ as +++FevvY+Prast+eF+v+v++v++a++v++s+GmRfkmafeteds ++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Seita.1G241500.1.p 367 AARLASAGQPFEVVYYPRASTPEFCVRVASVRAAMRVQWSPGMRFKMAFETEDSTRISWfMGTVAGVQVADPIRWPQSPWRLLQ 450
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-37204315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-29205314IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-21211312No hitNo description
PROSITE profilePS5086312.746212314IPR003340B3 DNA binding domain
SMARTSM010191.3E-20212314IPR003340B3 DNA binding domain
PfamPF023621.4E-21212313IPR003340B3 DNA binding domain
PfamPF065072.6E-33367450IPR010525Auxin response factor
PROSITE profilePS5174515.605700780IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MQLHAPLNNW ISTLSPTRAP SRYPGALSPT SRSPNGALIS RNGVGLLLLV TVRTGASYTR  60
HRPARLRLLH LRTPLSLLHR LSLAAVRASP MITFADLTEP AAAGADRCVD RQLWLACAGG  120
MCTVPPVGTS VYYFPQGHAE HALGLAGAAD LSAARIPALV PCRVAAVRYM ADQDTDEVFA  180
RIRLVPLRAG EADAGLEDDP AADDEQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR  240
LDYAADPPVQ TVVAKDVHGA AWKFRHIYRG TPRRHLLTTG WSTFVNQKKL VAGDSIVFLR  300
GDGGDLHVGI RRAKRGFCGA GGGGGGGEEA LPMPGWDHYA GMMRGNVSPC GSAKARGKVR  360
PEDVAEAARL ASAGQPFEVV YYPRASTPEF CVRVASVRAA MRVQWSPGMR FKMAFETEDS  420
TRISWFMGTV AGVQVADPIR WPQSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSSIPAIH  480
LASFSPPRKK PRIPAYPEFP FEGQLLNPAF PPTPLSHGHH GHHYLHTHPS FFPFPDGSAP  540
AAIQGARHAQ FVPPLSDLHL THLQSSLLYP GLRRPDHVGR AAPIPARIST DLTIGGAPAR  600
DDMSCALSIG ADKKQPGGAK PAGLVLFGRT ILTEQQMSLS GSAGATSPAA TGNGYMNWNA  660
DKGPNASEGS GSGVIQNSPT KNASSSERPP WFTELAGLEP GQCKVFVESD TVGRNLDLSA  720
LGSFDELYGR LSEMFCIESA ELRSRVLYRG AAGDVKHAGD EPFSVFVKSA RRITILTDAG  780
SDNLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-7810947151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G241500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16