 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.1G230500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
TCP |
| Protein Properties |
Length: 246aa MW: 26948.5 Da PI: 10.751 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.1G230500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 71.3 | 3.1e-22 | 35 | 148 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec....eaessss 80
aag+kd+h k+ T g+RdRRv ls+++a++f+d qd+L + ++sk+i WL++ ai+el+++ ++++as+ ++++ s
Seita.1G230500.1.p 35 AAGGKDQHNKVVTVWGLRDRRVQLSVPTAIQFYDSQDRLNVAQPSKAIKWLIRT---AIDELPSLdcsftlpGTDAASSPpaagDNVEVST 122
6899************************************************86...6888888877799994444433333222222222 PP
TCP 81 sasnsssg...................k 89
s+ +++ +
Seita.1G230500.1.p 123 SKT--NKSsvlslantparprtvkaptR 148
222..22223444444332322222220 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MEEIGMECTA YKRPRTALDG GSAAAWRMCQ VARAAAGGKD QHNKVVTVWG LRDRRVQLSV 60
PTAIQFYDSQ DRLNVAQPSK AIKWLIRTAI DELPSLDCSF TLPGTDAASS PPAAGDNVEV 120
STSKTNKSSV LSLANTPARP RTVKAPTREA TRPSGWREWG EPGRPRMSAA KRPDQGGSAA 180
GGRQWREERK RWSERERPVV HTVYGAAHHF RLQPGKDSSS MPPVSIDFVK NLPAEAGRMS 240
FLWTK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
