PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G175100.1.p | ||||||||
Common Name | LOC101760860, SETIT_019690mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 489aa MW: 53587.9 Da PI: 7.7898 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C k F r nL+ H r H Seita.1G175100.1.p 66 YICEVCLKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H + + Seita.1G175100.1.p 142 WKCDRCSKKYAVQSDWKAHTKIC 164 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-6 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.408 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 47 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.49E-6 | 137 | 162 | No hit | No description |
SMART | SM00355 | 230 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MSHTSEEESL NNFQQQAKLE ACAAGSSKGD TVMPAVKKRR GHPGNLDPDV EVVALSPKTL 60 LATNRYICEV CLKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP ELTCPHHDAS 120 RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK 180 DSFITHRAFC DALAEDNSRV NHSLATMVGS LHGHQQDIFS HGVPTFPASP TDVIANMSSN 240 DHNSDSHLRS LSPYALITRN TALFSNQISP KDSGFPLDGS ASSYPYMSMN SPYMSATALL 300 QKAAEMGAKT SQDPISPLLL KSFPSNVTTR DHMDISSGSQ GDSLGNSAAN SVGIKTAEDE 360 GSYMSGRSNI LMNSPWVSSY KPTTVPLIGL MNHPFAMRSE KESPGIFPGS QMQHSRQENI 420 SGVGDAGLTQ DFLGLGGSGN LEMSSETYNA DVTALSYSDE QQKPQEHIYS YHQSSLDSTA 480 LEKPIWES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-33 | 138 | 200 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 5e-33 | 138 | 200 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.1G175100.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184946 | 0.0 | KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818794.1 | 0.0 | protein indeterminate-domain 2-like | ||||
TrEMBL | K3YZI1 | 0.0 | K3YZI1_SETIT; Uncharacterized protein | ||||
STRING | Si019690m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11425 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-104 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G175100.1.p |
Entrez Gene | 101760860 |