PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G131600.1.p

Common Name

SETIT_016765mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 592aa MW: 63332.2 Da PI: 9.2953

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G131600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.4	3.4e-12	257	346	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++qrlw+++De+ +L +l ++ g+ p+ d + +v ++++ k + s++ eK+r+LK +++k v++ ++ ske++ +i++l Seita.1G131600.1.p 257 RAQRLWTKNDEMKVLEALAGHVKSDGTLPKTD--FLLATVGDRLDRKnCTYSDIYEKVRQLKGRYEKAVST-----GIVPSKEDELQIYKL 340 57*****************99999877655..68999999998652788**************99.....6777888899* PP DUF573 92 skkiWg 97 s+ +Wg Seita.1G131600.1.p 341 SEAVWG 346 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-15	259	346	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MSRKRRAPPP PPPPQESSSE ESGSVEEEEE EPPSHPARRM PPPAAAADGA DSSEGSGSDS 60 DSDTDAQAFQ MRQLHRFPTK LPPHPVPQPA SHAAAAADDD DEGESSESES EPENPEPVVQ 120 KKAAAAGKSK AEQERKRPAA DPAPSGKAKK AKAGAEKAAA PAEATPPGKA KKGKAESEKA 180 APEAPPAGKA KKGKAEQEKV VPEATPASKV KKVKAEEEKA ASEDTPSVKG KKGGGKLEKP 240 GVLDSSPSSS KPEKLPRAQR LWTKNDEMKV LEALAGHVKS DGTLPKTDFL LATVGDRLDR 300 KNCTYSDIYE KVRQLKGRYE KAVSTGIVPS KEDELQIYKL SEAVWGEKAK EALAAARSQN 360 DGAVTKSKKG QSNKQKVDGN SKGGTPKEAA ASTASQNGDS QKGSKKGQAI KEKTDRDVKS 420 RLSKEATATG TPSKSKKWDN QNEELDKDAK SGDLGKSKRE KTDKGKKDID RDSLKSKEAA 480 AANQNGGTLT KNKEGETHDD EVERDANVEV TRRGFDELQG LYSNLAAYVE EIEAQNPCGE 540 TLKRAFEFIG DEKAQSLEYK VKRQRVSEAK AQLRRADVKK DVLNTLMSLV D*

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MSRKRRAPPP PPPPQESSSE ESGSVEEEEE EPPSHPARRM PPPAAAADGA DSSEGSGSDS  60
DSDTDAQAFQ MRQLHRFPTK LPPHPVPQPA SHAAAAADDD DEGESSESES EPENPEPVVQ  120
KKAAAAGKSK AEQERKRPAA DPAPSGKAKK AKAGAEKAAA PAEATPPGKA KKGKAESEKA  180
APEAPPAGKA KKGKAEQEKV VPEATPASKV KKVKAEEEKA ASEDTPSVKG KKGGGKLEKP  240
GVLDSSPSSS KPEKLPRAQR LWTKNDEMKV LEALAGHVKS DGTLPKTDFL LATVGDRLDR  300
KNCTYSDIYE KVRQLKGRYE KAVSTGIVPS KEDELQIYKL SEAVWGEKAK EALAAARSQN  360
DGAVTKSKKG QSNKQKVDGN SKGGTPKEAA ASTASQNGDS QKGSKKGQAI KEKTDRDVKS  420
RLSKEATATG TPSKSKKWDN QNEELDKDAK SGDLGKSKRE KTDKGKKDID RDSLKSKEAA  480
AANQNGGTLT KNKEGETHDD EVERDANVEV TRRGFDELQG LYSNLAAYVE EIEAQNPCGE  540
TLKRAFEFIG DEKAQSLEYK VKRQRVSEAK AQLRRADVKK DVLNTLMSLV D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	559	564	KVKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G131600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952276.1	0.0	hepatoma-derived growth factor-related protein 2
TrEMBL	A0A368PK57	0.0	A0A368PK57_SETIT; Uncharacterized protein
STRING	Si016765m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Phytozome	Seita.1G131600.1.p